list
- CREST
- Control-FREEC
- Manta
- Delly
- LUMPY (does not detect insertion)
- GROC-SV
- Pindel ok
- Breakdancer ok
- BreakSeq
- SURVIVOR
- PopIns (for insertions)
- svABA
CREST
manta
- star:193
- update:2019-06-25
link
无需build，直接下载就可用。成功运行demo。
wget https://github.com/Illumina/manta/releases/download/v1.6.0/manta-1.6.0.centos6_x86_64.tar.bz2
tar -xjf *.tar.bz2
FREEC
git clone https://github.com/BoevaLab/FREEC.git
cd src
make
./freec -h报错
./freec: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by ./freec)
./freec: /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by ./freec)
./freec: /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by ./freec)
./freec: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by ./freec)
